Single-cell RNA-seq data of E8.25 whole mouse embryos
Data from:
Defining murine organogenesis at single-cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation
Gene expression
Germ-layer marker genes
Cell-type marker genes
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Gene of interest
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For comments or queries about this app please email:
ximena.ibarra@cruk.cam.ac.uk
Germ layer
endoderm
mesoderm
ectoderm
Max. number of subpopulations with 3rd quartile > 0
Click on a row to plot gene expression
Subpopulations
extraembryonicEndoderm
midHindgut
foregut
placodes
forebrain
midHindbrain
neuralTube
neuralCrest
blood
notochord
mesodermProgenitors
presomiticMesoderm
somiticMesoderm
pharyngealMesoderm
mixedMesoderm
cardiac
amnion
extraembryonicMesoderm
endothelial
extraembryonicEctoderm
Max. number of subpopulations with 3rd quartile > 0
Click on a row to plot gene expression
Download expression data for a subset of genes in specific subpopulations
Please select the cell-types of interest and either upload a file of gene names or enter them in the box provided.
extraembryonic endoderm
mid-hindgut
foregut
placodes
forebrain
mid-hindbrain
neural tube
neural crest
blood
notochord
mesoderm progenitors
presomitic mesoderm
somitic mesoderm
pharyngeal mesoderm
mixed mesoderm
cardiac
amnion
extraembryonic mesoderm
endothelial
extraembryonicEctoderm
Upload a file with one gene per row
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Or enter gene names
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Note that if the number of genes and/or cells is very large the data download might fail. The complete dataset can be downloaded as processed data from
ArrayExpress.